连续PCR扩增过程中异常现象的发生机理研究

聚合酶链式反应（Polymerase Chain Reaction，PCR）技术从其发明以来，因为其操作的简单方便和高效率而在生物学研究的各个领域得到了广泛的应用，包括序列扩增、序列的人工突变、疾病诊断、法医学鉴定、基因的表达分析等等。从PCR技术发明以来，如何提高反应的特异性和反应的效率一直是人们所共同关心的题目，为此也发展了相当数量的各种方法，如热启动PCR、降落PCR、巢式PCR以及在反应体系中添加一些有益的附属物等。而适合不同目的的PCR技术也得到了充分的发展，如多重PCR、反转录PCR、定量PCR、原位PCR、PCR突变、毛细管PCR技术等等。并且，包括随机引物扩增多态、扩增片段长度多态性、简单重复序列多态性、单核苷酸多态性等这些在PCR技术基础上发展而来的各种分子标记技术极大地方便了遗传分析和遗传图谱的构建等工作。在PCR技术发明了20年后的今天，提高PCR的反应性能、发展适合新领域的PCR技术和新的分子标记技术仍然是研究者关心的题目和努力的方向。 　　PCR实验中已经观察到多种异常现象，除了常见的扩增失败（没有产物）、扩增产物特异性不强（有非特异产物出现）、引物多聚体产物扩增、扩增效率低等现象以外，还包括PCR介导的重组、跳跃、复制滑动等等。阐明这些异常现象的发生机理和过程，避免或缓解这些异常现象在扩增过程中对目的产物扩增的影响，以及促进和利用一些特殊的异常PCR扩增都是PCR技术研究所关心的话题。各种研究工作中经常需要扩增一些长片段的序列，但是在进行长片段PCR时经常会发现扩增目标序列的长度是有限的、扩增效率比较低、扩增产物检测中有很强的背景弥散等现象;同时长片段PCR需要一些特殊的反应体系组成和反应条件。如何更加有效地实现更长序列的PCR扩增也是人们所关心的话题之一。 　　常见的PCR产物重复扩增（以上一轮扩增产物为模板进行新的PCR扩增）扩增轮数少，通常仅进行一次重复扩增;同时，在重复扩增中常使用的策略是使用巢式引物。而连续PCR扩增实验（用相同的引物以产物为模板进行多轮次的连续重复PCR扩增）从未见于文献报道。我们第一次系统地进行了连续PCR扩增实验;同时，在实验过程中我们观察到了一种新的PCR扩增异常现象——用不同来源的模板（病毒、细菌质粒或真核生物来源的DNA序列）进行连续PCR扩增不同长度的靶序列，经过有限次数的重复扩增后，最终都会导致扩增失败;这种扩增失败都表现为在常规琼脂糖电泳检测时特异产物条带的消失和不能泳动出点样孔之复杂异常产物的出现;这种扩增产生的异常产物能够被稳定地重复扩增。用λ和细菌质粒序列为模板连续扩增不同长度靶序列的结果表明：连续PCR扩增失败的时期具有扩增靶序列长度的依赖性，越长的靶序列在连续PCR中扩增失败的时期越早。 　　对不同连续PCR扩增的扩增过程观察表明扩增产物经历了一个从高效特异性扩增到低效率特异性扩增，再到扩增产生复杂异常产物的过程。对复杂异常产物的甲酰胺辅助变性处理和变性胶电泳（尿素变性聚丙烯酰胺胶电泳和NaOH碱变性琼脂糖电泳）检测表明扩增产生的复杂产物主要由连续分布的小于靶序列长度的具有相当程度多样性的非全长链组成。连续PCR产生的复杂产物在内部具有局部的双链区域和大量的单链区域及外部单链分支，能够被单链特异的S1核酸酶消化，但是不能被双链特异的限制性内切酶消化。用DNase I或限制性内切酶处理连续扩增早期产生特异扩增产物形成不同长度序列组成的混合物，或者直接用不同扩增反应产生的不同长度的核酸序列组成混合物，混合物在经历变性-复性后都表现出类似连续PCR失败所产生的异常产物电泳行为。这些证据都表明PCR扩增过程中形成的非全长链成分是导致这种异常现象的关键因素，多个不同长度的非全长链复性形成“杂种分子”（具有较大且不一致的分子量和复杂的分支结构），最终表现为常规琼脂糖电泳异常的复杂产物。同时，异常产物组成非全长链成分和全长链成分是其能够实现稳定重复扩增的基础。 　　实验结果表明：对于特定长度的靶序列而言，导致复杂异常出现的根本原因是连续PCR扩增体系中所经历的总PCR热循环数目（每一轮PCR扩增所使用的循环数目多，成功连续扩增的轮数就少）;而扩增体系中的引物浓度、DNA聚合酶用量的多少、扩增程序中时间参数等对此影响较小;巢式PCR和单引物-互补引物PCR的结果表明这些处理对于缓解或延迟异常产物的出现有一定的作用。人工处理（DNase I或限制性内切酶处理）完整模板双链形成的非全长链长产物，然后把非全长链长产物以不同比例同完整模板混合模拟连续扩增后期产物，这种人工混合模板表明连续PCR扩增中同源的非全长链成分对PCR扩增有严重的干扰作用，是导致复杂异常产物出现的直接原因。 　　已有的研究表明：PCR介导重组、长片段PCR难于操作有共同的产生基础——扩增过程中非全长链成分的产生和非全长链成分对后续扩增过程的干扰作用。这一点和导致连续PCR失败的原因是一致的。非全长链成分的出现是PCR扩增过程中不可避免的，其最初产生的可能来源有三个：模板的损伤（扩增前的模板损伤或扩增热循环过程中的损伤）、聚合酶的忠实性、以及聚合酶的进行性。根据聚合酶的特性而调整扩增程序中延伸时间的实验表明，聚合酶的进行性不是导致连续PCR扩增失败的最主要原因。这种非全长链成分产物从无到有且不依赖于体系中非全长链成分的过程我们称之为非全长链成分的初级合成;而已经存在的非全长链成分干扰后续合成形成非全长链成分的过程我们称之为非全长链成分的次级合成。非全长链成分的初级合成和次级合成共同导致了连续扩增的失败和异常产物的形成。 　　从已有的研究结果看，任何降低PCR扩增过程中非全长链成分产生的措施，特别是聚合酶忠实性的提高，都能缓解异常扩增产物的出现和利于长片段PCR操作。 　　

水稻胚囊发育畸变的细胞学和遗传学研究

1．水稻多卵卵器的起源：被子植物的卵器中通常只有一个卵细胞。我们在水稻多胚品系胚囊中观察到二卵卵器和三卵卵器，本研究对其大孢子发生和胚囊发育进行了细胞胚胎学观察，揭示了水稻多卵卵器的起源．观察结果表明，该品系能进行正常的大孢子发生。大孢子母细胞进行正常的减数分裂形成四个大孢子靠近合点端的大孢子发育，其它三个退化。功能大孢子第一次有丝分裂后两个子核被一中央大液泡分隔在胚囊珠孔端和合点端，与此同时胚囊出现不均衡生长，珠孔端迅速膨大，合点端几乎不增大，致使二核末期的胚囊呈倒梨形．紧接着发生第二次有丝分裂，合点端核分裂时纺锤丝与胚囊纵轴平行，而珠孔端核分裂时纺锤丝与胚囊纵轴成4 5度夹角．由此产生的四核胚囊中，合点端一核向胚囊中部或中上部（胚囊珠孔端）迁移，四核胚囊再经一次有丝分裂形成两种类型的核分布偏离蓼型的八核胚囊。一种类型是珠孔端四个核，中部与合点各二个核，在胚囊细胞化过程中，珠孔端四核 分化成四细胞卵器，其中卵细胞和助细胞各二个，中部的二核分化成二极核中央细胞，合点 端的二核形成反足细胞。另一种类型是珠孔端六个核，合点端二个核，在胚囊细胞化过程中， 两端各一核向中部迁移分化成二极核中央细胞，珠孔端剩余的五核分化成五细胞卵器，其 中卵细胞三个，助细胞二个，合点端的一核迅速分裂形成反足细胞． 2．水稻同源三倍体TAR的生殖特性：TAR的单穗结实率平均可达10%，核型分析表明此三倍体产生的后代个体仍为具有36条染色体的三倍体．细胞胚胎学初步观察显示TAR为一具兼性无融合生殖特性的水稻新种质，其胚珠几乎都能进行胚囊的分化，但其中仅有33%的胚囊有较正常的结构，9%的胚囊在散粉前进行胚胎发生，58%的胚囊发育显著异常，表现为极性紊乱、多极核或缺失雌性生殖单位等。 3．水稻亚种间杂种败育的细胞学基础：对普通栽培稻不同品种类型间杂种颖花败育的细胞学基础及雌性败育的过程进行的细胞学研究表明：1）引起杂种颖花败育的原因有胚囊败育，花粉败育、开花时花药不开裂和雌雄异熟．其中胚囊败育而丧失受精能力是引起低结实率的最重要的因素，开花时花药不开裂和雌雄异熟在一定程度上形成了雌雄性细胞时间和空间的隔离屏障。2）杂种植株的所有大孢子母细胞都能进行正常的减数分裂形成四个大孢子，败育主要发生在靠近合点端的功能大孢子分化形成胚囊的早期，有的胚囊母细胞在进行第一次有丝分裂前便萎缩解体，多数能完成一次或二次有丝分裂形成二核或四核败育胚囊．败育的共同特征是无液泡的分化，细胞质少或退化，在败育胚囊残迹部位，解体的珠心细胞和萎缩的胚囊残溃混杂垛叠．已受精的杂种子房没有观察到胚及胚乳发育的异常．籼粳杂种胚囊败育频率较高． 4．籼粳杂种生殖障碍的基因定位：应用具有1 37个标记位点的籼粳杂交窄叶青8号/京系17)F1花药培养获得的127个双单倍体OH）群体构建的R FLP图谱，对控制籼粳杂种颖花败育的基因座位进行了定位研究。结果在第1、3、4、5、6、7、8、1 2染色体上检测到1 0个基因座位，其中第3、12染色体上的2个不育基因位点str3和str12与同一杂交组合F2分离群体中发现的异常分离热点处于相同的染色体区段．stj-6的基因加性效应为负值，有增加籼粳亲和性的作用;其余的不育基因座位皆有增加籼梗杂种不育性的作用． 5．籼粳杂种胚囊败育的遗传分析和基因定位：利用DH系构建的分子图谱及DH系衍生的2个回交群体定位了引起籼梗杂种胚囊败育的2个互补的主效基因esa-l（E1或e1位点）和esa-2（E2或e2位点），它们分别位于第6和第1 2染色体．在不育基因位点，籼稻基因型为EIEle2e2，粳稻基因型为elelE 2E 2，杂交后代中基因型为EIE2，Ele2、elE 2的雌配子体正常发育，携带ele2基因型的雌配子体表现败育．胚囊育性受配子体基因型控制，孢予体遗传背景影响胚囊败育基因的表达.

Diffusive coevolution and mutualism maintenance mechanisms in a fig-fig wasp system

In reciprocal mutualism systems, the exploitation events by exploiters might disrupt the reciprocal mutualism, wherein one exploiter species might even exclude other coexisting exploiter species over an evolutionary time frame. What remains unclear is how such a community is maintained. Niche partitioning, or spatial heterogeneity among the mutualists and exploiters, is generally believed to enable stability within a mutualistic system. However, our examination of a reciprocal mutualism between a fig species (Ficus racemosa) and its pollinator wasp (Ceratosolen fusciceps) shows that spatial niche partitioning does not sufficiently prevent exploiters from overexploiting the common resource (i.e., the female flowers), because of the considerable niche overlap between the mutualists and exploiters. In response to an exploiter, our experiment shows that the fig can (1) abort syconia-containing flowers that have been galled by the exploiter, Apocryptophagus testacea, which oviposits before the pollinators do; and (2) retain syconia-containing flowers galled by Apocryptophagus mayri, which oviposit later than pollinators. However, as a result of (2), there is decreased development of adult non-pollinators or pollinator species in syconia that have not been sufficiently pollinated, but not aborted. Such discriminative abortion of figs or reduction in offspring development of exploiters while rewarding cooperative individuals with higher offspring development by the fig will increase the fitness of cooperative pollinating wasps, but decrease the fitness of exploiters. The fig fig wasp interactions are diffusively coevolved, a case in which fig wasps diversify their genotype, phenotype, or behavior as a result of competition between wasps, while figs diverge their strategies to facilitate the evolution of cooperative fig waps or lessen the detrimental behavior by associated fig wasps. In habitats or syconia that suffer overexploitation, discriminative abortion of figs or reduction in the offspring development of exploiters in syconia that are not or not sufficiently pollinated will decrease exploiter fitness and perhaps even drive the population of exploiters to local extinction, enabling the evolution and maintenance of cooperative pollinators through the movement between habitats or syconia (i.e., the metapopulations).

淋巴细胞免疫治疗原发性习惯性流产

对49例确诊为原发性习惯性流产(41.76%)中的29例采用丈夫肘静脉血40ml分离淋巴细胞行主动免疫治疗(一般妊娠前治疗两次,妊娠后治疗两次),现有17例妊娠,其中11例已分娩;5例在中期妊娠;1例失败。妊娠成功率为94.12%(16/17)。另20例未经主动免疫治疗作为对照组,妊娠成功率为27.78%(5/18),两组相比差异有显著性(P<0.05),对部分病例进行了治疗前免疫状态检测,包括微淋巴细胞毒抗体阴性,杀伤淋巴细胞低下改变的检测。结果提示丈夫淋巴细胞主动免疫法的有效性及可提高患者免疫反应性,有较可靠的临床效果及应用价值。

学习困难儿童智力结构及其与心理语言、视动能力关系的研究

IQ Structure, Psycholinguistic and Visual-motor Abilities Study on Children Learning Disability TONG Fang Directed by professor Zhu Liqi (Developmental and educational psychology) ABSTRACT Objective To comprehensive analyze the IQ structures, and relationships among IQ, psychometric characteristics and visual-motor integration on children disability. At same time, to probe into the family factors that influenced IQ, psycholinguistic abilities and behavior of LD children. Method (1) Downloading the papers on children learning disability from www.cqvip.com and www.wanfangdata.com, in which, the articles were collected by key words from 1985 to 2005. To conduct meta-analysis on IQ construction, compare the case group and the control group, including full IQ, verbal and practice IQ. (2) Designed with model compared and self-compared, 59 diagnosed learning disability children, tested themes with WISC, ITPA and Berry’s VMI. WISC included 10 items, 5 of which subtotal to verbal and practice IQ respectively. IPTA included 10 items, too, 5 process of which subtotal to auditory and visual perception. The first 3 items shared representation level, the other 2 of that shared automatic level.VMI had one score. Analyzed factors and levels with description and Pearson Correlation. To probe to linguistic internal alternately functions of LD children, and compare the scores of groups in different IQ. (3) Analyzed the perspective questionnaire filled by parents. Early development facts compared with model groups. Factors relationships analyzed with Kendall correlation, KOM and Bartlett’s test of sphericity, Promax Rotation. Results: (1) There have been 319 papers related with LD, in which 36 with IQ and 14 valid reports have been analyzed by Meta. FIQ’s 95%CI (confidence interval) is 2.418 ~ 0.172, VIQ between the difficulty and non- difficulty group. C-WISC-R reports were 10 papers, of which, 95%CI of FIQ is 2.424 ~ 0.676, of VIQ is 2.314 ~ 1.196, of PIQ is 2.176 ~ 0.176. The VIQ comparing the PIQ, 95%CI is 1.1 ~ -0.07 in difficulty group and 0.5 ~ -0.0046 in non-difficult group. Nevertheless, in the other 4 tests, FIQ’s 95%CI is 2.00 ~ -0.818 between LD and NLD. (2) Children psycholinguistic abilities had strong relation with Berry’s VMI test excluding auditory reception, and with perceptive factor of intelligence excluding verbal expression. Auditory reception and visual closure had strong relation with FIQ and PIQ. Grammatic closure, visual association and manual expression had strong relation with concept factor. The representational and automatic levels are depended on integration of auditory and visual procession. Lower verbal expression (VE) let to lower expression process and low scores on representational level. Lower visual sequential memory (VSM) let to lower memory process and influenced automatic level. Groups compared by IQ 90 show that LD children with under IQ 90 had lower scores on items of IPTA than with up IQ 90 excluded verbal expression. It was proved that IQ administrated the linguistic ability. Nevertheless, general abilities deficiency didn’t show influencing on the types of the perceptive delay. There was mutual function among linguistic ability on LD children. Auditory and visual level are overlapped each other. Not only show higher Decoding and lower Encoding on Auditory perception, lower Decoding and higher Encoding on Visual perception, in representation, but also higher Sequential remember, lower Closure on Audition, and lower Sequential member, higher Closure on Vision, in Automation. Nevertheless, there was no different between Representational and Automatic level, which may be the relationship of parallel or evolution. (3) Major family factors were father’s education, occupation. Lower auditory perception related to unconcerned, lower visual perception related to premature delivery and written slowly. Threatened–abortion, childbirth-suffocated were known as influencing children’s IQ and later linguistic abilities. It wasn’t shown that dosage relationship with the types of perceptive delay. Conclusion: (1) The FIQ, VIQ and PIQ of Children with LD is lower than that of NLD group. There is no significantly different between VIQ and PIQ in LD and NLD groups. (2) The objectives of ITPA and WISC tests are differently. The psycholinguistic abilities had strong relation with perceptive factor and VMI. Some facts of IPTA related with FIQ. IQ had strong administration on linguistic abilities. There was mutual function among linguistic internal abilities. (3) Family facts on IQ and psycholinguistic abilities were Father’s education, abnormal pregnant and abortion. It would be pre-show development delay in early period.